Hello Modellers!
I have an error message popping up and am not sure how to interpret. Here it is:
delete__443_> Restraints marked for deletion were removed. Total number of restraints before, now: 41972 38728 act10___551E> No such routine: recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1
I have not updated my Modeller6 to Modeller6v2 yet. Maybe that's the problem.
Any help is much appreciated.
Troy Wymore Pittsburgh Supercomputing Center Biomedical Initiative Group
Troy,
I'd do that first. 6v2 is quite stable. I guess that's what they are paying me for ;-)
Cheers, Bozidar
On Thu, 1 Aug 2002, Troy Wymore wrote:
> > Hello Modellers! > > I have an error message popping up and am not sure how to interpret. Here > it is: > > delete__443_> Restraints marked for deletion were removed. > Total number of restraints before, now: 41972 38728 > act10___551E> No such routine: > recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1 > > I have not updated my Modeller6 to Modeller6v2 yet. Maybe that's the > problem. > > Any help is much appreciated. > > Troy Wymore > Pittsburgh Supercomputing Center > Biomedical Initiative Group > >
Hello Bozidar,
I updated my version and still get the same error as before. The program produces the following before dying though:
g106.D00000001 g106.ini g106.rsr g106.sch
The fact that it builds the initial model and some other files suggests that the input is okay. I can send the input if you like.
Thanks for any help,
Troy Wymore
Troy,
Yes please, send me a whole tar-ball.
Thanks, Bozidar
On Thu, 1 Aug 2002, Troy Wymore wrote:
> > Hello Bozidar, > > I updated my version and still get the same error as before. The program > produces the following before dying though: > > g106.D00000001 > g106.ini > g106.rsr > g106.sch > > The fact that it builds the initial model and some other files suggests > that the input is okay. I can send the input if you like. > > Thanks for any help, > > Troy Wymore > > >
Hi, I have two questions and will be thankfull if any of you knows how to solve the following questions.
1.
When modeller runs on a moltiple alignment it sometimes does not generate a model and gives the error : Increase MAXSPL to at least 630 ERROR_STATUS >= STOP_ON_ERROR: 1 1
If i understand correctly this error occurs because the models that are imposed by the given alignments are not superimposable. This probably happens because of some fragment/s in one or more of the alignmnets. I prefer not to model that part at all than to increase the value of MAXPL.
Is there any way i can deduce from the log file which a.a's i sould delete so that this error will not occur ?
2. I sometimes get the error STDEV < 0 What causes the standart deviation to be smaller than zero ? How can i correct such an error? that is , how can i know what parts of the alignmnet i sould remove , or anything else ?
Thanks alot! Iris.
Hi again, How do i change parameters values? Particularly, i got the error massege
splinel_223E> Array too small. Increase MPRMCNS current maximum, current need: 874800 874842
How do i set a new value to this parameter?
Thanks again, Iris
> splinel_223E> Array too small. Increase MPRMCNS > current maximum, current need: 874800 874842 > How do i set a new value to this parameter?
You can't, it's hardcoded, but there is no need for it. All these problems come from your less-then-optimal alignment.
Best, Bozidar
> Is there any way i can deduce from the log file which a.a's i sould delete > so that this error will not occur ?
Try OUTPUT = 'LONG'
Best, Bozidar
Hi, Bozidar, thanks for your answers.
Each time that i run the default script of modeller on multiple alignmnet i get the following worning massege:
mdtrsr__446W> A potential that relies on one protein is used, yet you have at least one known structure available. MDT, not library, potential is used.
Is there any way i can change this parameter?
Thanks Iris.
participants (3)
-
Bozidar Yerkovich -
sasson iris -
Troy Wymore