Hello Bozidar,

I updated my version and still get the same error as before. The program produces the following before dying though:

g106.D00000001 g106.ini g106.rsr g106.sch

The fact that it builds the initial model and some other files suggests that the input is okay. I can send the input if you like.

Thanks for any help,

Troy Wymore

Hi, I have two questions and will be thankfull if any of you knows how to solve the following questions.

1.

When modeller runs on a moltiple alignment it sometimes does not generate a model and gives the error : Increase MAXSPL to at least 630 ERROR_STATUS >= STOP_ON_ERROR: 1 1

If i understand correctly this error occurs because the models that are imposed by the given alignments are not superimposable. This probably happens because of some fragment/s in one or more of the alignmnets. I prefer not to model that part at all than to increase the value of MAXPL.

Is there any way i can deduce from the log file which a.a's i sould delete so that this error will not occur ?

2. I sometimes get the error STDEV < 0 What causes the standart deviation to be smaller than zero ? How can i correct such an error? that is , how can i know what parts of the alignmnet i sould remove , or anything else ?

Thanks alot! Iris.

> splinel_223E> Array too small. Increase MPRMCNS > current maximum, current need: 874800 874842 > How do i set a new value to this parameter?

You can't, it's hardcoded, but there is no need for it. All these problems come from your less-then-optimal alignment.

Best, Bozidar

Hi, Bozidar, thanks for your answers.

Each time that i run the default script of modeller on multiple alignmnet i get the following worning massege:

mdtrsr__446W> A potential that relies on one protein is used, yet you have at least one known structure available. MDT, not library, potential is used.

Is there any way i can change this parameter?

Thanks Iris.