On Tue, Sep 03, 2002 at 01:29:23PM +0900, ?????? wrote: > Hi modellers.. > > When i run modeller6v1, i met 'sequence not read in' message in .log file... > There are not any problems in .ali file.... > If the known sequence residue number is different with its residue number in PDB file, how can i edit the PDB file ? > > e.g. > > .ali file > MFMKF...... > > .pdb file > M 5 > F 6 > M 10 > ...... > > Regard.. > > Byung-Kwan Cho >

Sounds like you need to insert gaps into your .ali where there are missing residues in your .pdb (You'll need to remove residues 6-10 from your .ali file).