> > >> >> From: "Andersen, Kim Vilbour (KVA)" kva@maxygen.dk >> To: modeller_usage@salilab.org >> Content-Transfer-Encoding: 8bit >> X-MIME-Autoconverted: from quoted-printable to 8bit by >> salilab.org id g4HCeIDD023046 >> >> Hi >> >> I'm trying to model a glycoprotein with Modeller and would like to >> include the glyco-part in the modelling. >> >> I'm fighting with the creation of topology files (and parameter files) >> creating the topology of the different involved sugar residues as well >> as patch residues to create the relevant bonds. >> >> Has anybody out there done this already and are willing to share? >> >> I'm mainly interested in N-acetylglucosamine, N-acetylgalactosamine, >> Mannose, Galactose and Sialic acid as well as the relevant patchings. >> >> Any input will be appreciated, >> >> thanks >> >> Kim >> >> ------------------------------------------------------------------------ >> Kim Vilbour Andersen, PhD >> Principal Scientist >> Maxygen >> Agern AllÈ 1 >> DK-2970 H¯rsholm >> Denmark >> ------------------------------------------------------------------------ >> >