Dear MODELLERS, MODELLER doesn't incorporate MSP based alignment consideration. I have two queries.

1. How to make MODELLER consider HSP to be extended on either side to generate. 2. How to generate a profile based best structural alignment of all considered templates against the target sequence.

Thanks Ashish

Ashish Runthala, Lecturer, Structural Biology Cell, Biological Sciences Group, BITS, Pilani Rajasthan, INDIA