Dear Modellers,
I am trying to model a protein containing a heme group. There is a residue type called heme in top_heav.lib, but I don`t know how to utilize it. I am aware of changing my alignment to include HETATMs but I haven`t succeeded yet.
Do I have to change the pdb-templates to include the heme residue? How can I make it clear that MODELLER 6v1 should use it?
Is it possible to receive the model with the heme group in it?
Thanks for any suggestions,
Christoph Nimptsch
please follow instructions from FAQ (Freq. Asked Questions) point 16, Modeller manual
http://salilab.org/modeller/manual/node29.html
good luck Andras
Christoph Nimptsch wrote: > > Dear Modellers, > > I am trying to model a protein containing a heme group. > There is a residue type called heme in top_heav.lib, but I don`t know how to > utilize it. > I am aware of changing my alignment to include HETATMs but I haven`t > succeeded yet. > > Do I have to change the pdb-templates to include the heme residue? How can I > make it clear that MODELLER 6v1 should use it? > > Is it possible to receive the model with the heme group in it? > > Thanks for any suggestions, > > Christoph Nimptsch
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