On Tue, Dec 30, 2003 at 06:55:17PM -0800, nick jones wrote: > I have a problem with modeller. I am new to the program and I couldnt > find a manual for modeller usage in a command prompt. If anyone has a > manual for modeller usage in MS-DOS command prompt or knows how to open > pdb files from it please help!

Modeller works in identical fashion from a Unix shell or the Windows command prompt, so the standard manual at http://salilab.org/modeller/manual/ should be all you require. See also http://salilab.org/modeller/FAQ.html#b

Ben Webb, Modeller Caretaker