Hi, I´m trying to model 5 SS bridges. When I try to tell modeller 9v1 to do that,I receive the following error: Could not find platform independent libraries <prefix> Could not find platform dependent libraries <exec_prefix> Consider setting $PYTHONHOME to <prefix>[:<exec_prefix>] 'import site' failed; use -v for traceback File "test_ssmodel_fasciola.py", line 9 def special_patches(self, aln): ^ IndentationError: expected an indented block

What might be wrong? The script, #Homology modelling by the automodel class from modeller import * # Load standar Modeller classes from modeller.automodel import * # Load the automodel class #Redefine the special_patches routine to include the additional disulfides #(this routine) class mymodel(automodel): def special_patches(self, aln): # A disulfide between residues 10-51,44-47,43-110,80-114,88-100: self.patch(residue_type='DISU', residues=(self.residues['10'], self.residues['51'])) self.patch(residue_type='DISU', residues=(self.residues['44'], self.residues['47'])) self.patch(residue_type='DISU', residues=(self.residues['43'], self.residues['110'])) self.patch(residue_type='DISU', residues=(self.residues['80'], self.residues['114'])) self.patch(residue_type='DISU', residues=(self.residues['88'], self.residues['100'])) log.verbose() # request verbose output env = environ() # create a new MODELLER environment to build this model in # directories for input atom files env.io.atom_files_directory = './' a = mymodel(env, alnfile = 'test_fasciola.ali', # alignment filename knowns = '1gmy_A.pdb', # codes of the templates sequence = 'Q8I7B2_sequence') # code of the target a.starting_model= 1 # index of the first model a.ending_model = 1 # index of the last model # (determines how many models to calculate) a.make() # do the actual homology modelling

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