Respected Sir
1. Can I get any detailed documentation explaining mutate_model python script.
Since, I am a beginner both in Python and MD Simulations, I am finding it tricky to understand this script.. The link is as follows.
http://salilab.org/modeller/wiki/Mutate%20model
2. My second doubt is " How and where can I specify the mutation. Is 1699 mentioned in this script "RESIDUE POSITION " and LEU as "MUTANT RESIDUE" ?
3. My third doubt is how much time will it take for this script to run ?
4. My Fourth doubt is at the end, will I get single or multiple models ? If the output is multiple model, how shall I select the best one ?
Please send some detailed documentation for this script. I am unable to understand the basic logic behind this script..
I will be highly obliged.
Thanks Priya
On 6/21/13 11:49 PM, Priya Chaudhary wrote: > 1. Can I get any detailed documentation explaining mutate_model python > script.
There are quite a lot of comments in the script and on the wiki page.
> 2. My second doubt is " How and where can I specify the mutation. Is > 1699 mentioned in this script "RESIDUE POSITION " and LEU as "MUTANT > RESIDUE" ?
Yes. Also, the chain (A) is specified in that example.
> 3. My third doubt is how much time will it take for this script to run ?
I suggest you run it and see. Typically, it'll take just a few seconds.
> 4. My Fourth doubt is at the end, will I get single or multiple models ? > If the output is multiple model, how shall I select the best one ?
Run it and see - you'll get a single model.
Ben Webb, Modeller Caretaker
participants (2)
-
Modeller Caretaker -
Priya Chaudhary