Dear Senthil,

Your alignment format is incorrect. Please check again Roberto's and Eric's detailed answers to your questions. They illustrated their point with examples in proper PIR format. Alternatively, please check modeller manual for PIR alignment format, pp17-19. The same files, as working examples are included in the distribution of the program, under /examples directory. additionally in the FAQ section of the manual, please check point 4 and 16, about including heteroatoms, using dimers (and proper alignment format).

Best wishes,

Andras

R Senthil Kumar wrote:

> Dear modeller users, > > I am having a template molecule and it is of homodimer.one chain is of > 267aa and other chain has 267aa and has two molecule of heteroatoms.Each > heteroatoms in each subunit. > > I want to include this heteroatoms in my model.I am having trouble in > representing the following line in template molecule so that it will take > heteroatoms also. > > structureX:xxxx: 1 :A: 267 :B: 1 : 267 : 2.10:99.90. > > please help me in this regard.Advance thanks. > > from > Senthil kumar.R > > > R.Senthil Kumar, > Junior Research Fellow(JRF), > c/o Dr.Akash Ranjan, > Computational & Functional Genomics Group, > Center For DNA Fingerprinting(CDFD), > Hyderabad-500 076 > > Ph:040-7151344-Extn(Lab:1304) > (Hostel:2300) > E-mail:skumar@www.cdfd.org.in > > > > > > > > > > > > > > > > > >