On 12/29/2011 03:41 AM, 조윤성 wrote: > But I want to change the directory path of output files(model pdb files) > and input files(pir files) form the source files. > > For example, if sources are located in "/home/xxx/" and input files are > located in "/home/xxx/input/", > > i want to save result pdb files in to the /home/xxx/output/. > > However, in "model-single.py", modeller.automodel() doesn't have > parameter related output path, and result pdb files are generated > automatically in to the directory that source located.

Modeller always generates output files in the current directory. So if you want to generate outputs in /home/xxx/output/, change into that directory first before running your script. e.g. if your script is /home/xxx/input/foo.py, run it with something like

cd /home/xxx/output python ../input/foo.py

Ben Webb, Modeller Caretaker