16 May
2005
16 May
'05
4:02 p.m.
Hi,
I'm wondering how to force the align2d procedure to align the sequences to the structures, under the constraint that a particular residue be aligned in all sequences. i.e. is there a better way than to split the alignment into two alignment procedures?
17 May
17 May
12:23 p.m.
gerald.quon@utoronto.ca wrote: > I'm wondering how to force the align2d procedure to align the sequences to the > structures, under the constraint that a particular residue be aligned in all > sequences. i.e. is there a better way than to split the alignment into two > alignment procedures?
You can do this with salign or align2d, using fix_offsets. See http://salilab.org/modeller/manual/node194.html#SECTION008921600000000000000 for an salign example.
Ben Webb, Modeller Caretaker
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gerald.quon＠utoronto.ca -
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