On 10/09/2009 03:01 AM, Jonathan Harris wrote: > On the page http://salilab.org/modeller/tutorial/iterative.html > the tutorial says > "The insertion between position 85 and 88 of the alignment was placed in > the middle of an α-helix in the template (the "9" characters on the > first line below the sequence mark the helices). Moving the insertion to > the end of the α-helix may improve the model." > But in the two PAP examples on the page I cannot see any difference at > positions 85 - 88. What am I missing here?

Good catch! There was actually a mistake in that first alignment, which has now been corrected.

Thanks for bringing this to my attention.

Ben Webb, Modeller Caretaker