Hi,

For multiple templates try to follow this example:

http://salilab.org/modeller/9.10/manual/node21.html

Try to put those lines below, at the end of your script model-multiple.py script. It will display the top five models at the end of your model-multiple.log file.

# Get a list of all successfully built models from a.outputs ok_models = filter(lambda x: x['failure'] is None, a.outputs)   # Rank the models by DOPE score key = 'DOPE score' ok_models.sort(lambda a,b: cmp(a[key], b[key]))

# Get top model m = ok_models[0]

print "Top model 1: %s (DOPE score %.3f)" % (m['name'], m[key]) m = ok_models[1]

print "Top model 2: %s (DOPE score %.3f)" % (m['name'], m[key]) m = ok_models[2]

print "Top model 3: %s (DOPE score %.3f)" % (m['name'], m[key]) m = ok_models[3]

print "Top model 4: %s (DOPE score %.3f)" % (m['name'], m[key]) m = ok_models[4]

print "Top model 5: %s (DOPE score %.3f)" % (m['name'], m[key])

Regards,

Flavio

--- On Mon, 12/10/12, Krupal Jethava krupal.jethava@gmail.com wrote:

From: Krupal Jethava krupal.jethava@gmail.com Subject: [modeller_usage] modeling with multiple sequence alignment. To: modeller_usage@salilab.org Date: Monday, December 10, 2012, 11:26 AM

Dear Sir,   I am trying to use modeller for multiple sequence alignment but I got error while running script for DOPE score. will you guide from the beginning. how to make input file and which script should I use for that. Thanks.

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