Hi, Please help me in this regard. I was working on windows XP with Modeller 9v5 and python v 2.5.1. Now I have another PC with Windows 7 Ultimate. I tried to run modeller 9v5 and python 2.5.1. on windows7. There was no error and no files generated in folder. What should I do?
Is it because of wrong combination of modeller and python. If yes then which versions I should use.
script I used.
# Homology modeling with multiple templates from modeller import * # Load standard Modeller classes from modeller.automodel import * # Load the automodel class
log.verbose() # request verbose output env = environ() # create a new MODELLER environment to build this model in
# directories for input atom files env.io.atom_files_directory = ['.', '../atom_files']
a = automodel(env, alnfile = 'alignment.ali', # alignment filename knowns = ('tseq.pdb'), # codes of the templates sequence = 'qseq') # code of the target a.starting_model= 1 # index of the first model a.ending_model = 1 # index of the last model # (determines how many models to calculate) a.make() # do the actual homology modeling
Thanks in advance.
On 12/12/12 12:40 AM, Krupal Jethava wrote: > I was working on windows XP with Modeller 9v5 and python v 2.5.1.
Why such an old version of Modeller? 9.11 is the latest.
> Now I have another PC with Windows 7 Ultimate. I tried to run modeller > 9v5 and python 2.5.1. on windows7. There was no error and no files > generated in folder. What should I do?
How did you run your Modeller script? From the command line? If you just double-clicked on it, I don't know how you'd expect to see an error if one occurred anyway. Either run it by just typing the name of the script at the command line, or right click on the script and open it in IDLE (the Python environment) and run it that way (F5, I think). Then you'll see any errors that occur.
Ben Webb, Modeller Caretaker
participants (2)
-
Krupal Jethava
-
Modeller Caretaker