Are there any experienced users of Modeller out there that have tried other homology modeling software like Prime from Schrodinger or MOE from the Chemical Computing Group ?. Experiences, pros and cons ?
Thanks
Omar Stradella
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In message 9C5166762F311146951505C6790A9CF802EF112D@US-VS1.corp.mpi.com (on 12 November 2004 14:42:00 -0500), Omar.Stradella@mpi.com (Stradella, Omar) wrote: >Are there any experienced users of Modeller out there that have tried >other homology modeling software like Prime from Schrodinger or MOE from >the Chemical Computing Group ?.
No, but I am looking at using a combination of open-source programs (e.g., CONGEN for energy minimization, Pfam for alignments when a good enough profile is available, etcetera) and home-built software (which will likewise be available on an open-source basis) for doing essentially the same thing, at least for relatively short differences between proteins. (If anyone knows of more directly applicable open-source (or public-domain with source code available) software, I would be very interested in taking a look at it!) I have been concentrating on some other aspects of my particular research project, however, so cannot say how well this is going to work.
-Allen
participants (2)
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Ed Allen Smith -
Stradella, Omar