Dear Modellers, I am facing a small problem. Alignments are not coming the way i expect. Is there any way that when i change the alignments to be glocal based on BLOSUM80 scores. It first do local and then proceed for optimum global alignments.

I AM MESSED UP WITH SHIFTED ALIGNMENT PROBLEMS.

Thanks, Ashish

Ashish Runthala, Lecturer, Structural Biology Cell, Biological Sciences Group, BITS, Pilani Rajasthan, INDIA