ModPipe-users October 2013

modpipe-users@salilab.org

4 participants
2 discussions

Re: [ModPipe-users] [modeller_usage] Fwd: Installation Issues
by Modeller Caretaker 21 Oct '13

21 Oct '13

On 10/18/2013 01:12 PM, Amjad Farooq wrote: > However, when I run a test under /tests, I get the following error: > > make > ************************************************************************** > cd unit && ../../int/runscript.sh python run-all-tests.py -v > /dev/null > /bin/sh: ../../int/runscript.sh: No such file or directory > make: *** [unit] Error 127 > ************************************************************************** > > Where is this ../../int/runscript.sh script? The /int directory is empty! It looks like you forgot to run the Setup script. Ben Webb, Modeller Caretaker -- modeller-care(a)salilab.org http://www.salilab.org/modeller/ Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage

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Installation Issues
by Amjad Farooq 18 Oct '13

18 Oct '13

Dear Ben, How does one install MODELLER 9.12 inside ModPipe? I have MODELLER 9.12 installed on a linux machine and it runs fine. But, I am having some issues with installing MODELLER 9.12 inside ModPipe. According to the instructions, one should make changes to the $MODPIPE/ext/mod/bin/modXXX executable: http://salilab.org/modpipe/doc/install-ext.html#install-ext But, I do not see modXXX under the bin/ directory in MODELLER 9.12? The only scripts available under the bin/ in MODELLER 9.12 appear to be: mod9.12_i386-intel8 modpy.sh.in modslave.py Is there a way to tell ModPipe to read in automatically pre-installed MODELLER 9.12 at another location instead of installing it again under $MODPIPE/ext/mod/ on the same machine? Can you please help?! Thanks very much, Amjad *AMJAD FAROOQ PhD DIC | Associate Professor Dept of Biochemistry & Molecular Biology | Miller School of Medicine | University of Miami | Miami | FL 33136 Located @ Gautier Building #217 | Mail @ 1011 NW 15th Street #217, Miami , FL 33136 amjad(a)farooqlab.net | off 305-243-2429 | lab 305-243-9799 | fax 305-243-3955 | www.farooqlab.net*

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ModPipe-users October 2013