Romain,
TSVMod is an external program, that is not included in Modeller.
It is currently not publicly available. It is not just a script, but additionally uses large custom database files to calculate the score.
Did you use the option
--score_by_tsvmod OFF
when starting ModPipe.pl?
Best regards, Ursula
On Wed, May 18, 2011 at 3:46 AM, Romain Studer
<romain.studer@unil.ch> wrote:
Dear Modpipe developers,
I cannot find the program TSVMod.
In changelog:
"- Introduced flag to disable TSVMod calculation if needed
- TSVMod scores are incorporated into ModPipe. Scores will be
calculated for all structures. Additionally, when chosen as a gathering
option, models with a predicted no35>0.4 will be selected. "
In the doc/modpipe.conf:
"# - TSVMod executables
TSVMODEXE
/netapp/sali/ModPipe/database/TSVMod/programs/main/score_tsvmod.pl"
But I cannot find any "score_tsvmod.pl" in neither modpipe-2.2.0 nor
modeller-9.9.
I tried to set it to OFF in my modpipe.conf:
# - TSVMod executables
TSVMODEXE OFF
But it still printing warnings:
"MPLib::MPModules::GetModels__M> Number of alignments to process: 2
MPLib::MPModules::GetModels__M> Number of models calculated: 1
MPLib::MPModules::GetModels__M> Number of models calculated: 1
PLLib::TSVModUtils::ExecTSVMod__E> Could not find TSVMod executable:
PLLib::TSVModUtils::ExecTSVMod__E> Could not find TSVMod executable: "
Where I can find the TSVMod program?
Or how I can set it to off to not use it?
Thank you for your answer.
Best regards,
Romain
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