Hello Ben,
Thank you very much for you help,I changed `pwd` to  "pwd" before, 

Sincerely,
Zhoujb

2016-03-10 4:00 GMT+08:00 <modpipe-users-request@salilab.org>:
Send ModPipe-users mailing list submissions to
        modpipe-users@salilab.org

To subscribe or unsubscribe via the World Wide Web, visit
        https://salilab.org/mailman/listinfo/modpipe-users
or, via email, send a message with subject or body 'help' to
        modpipe-users-request@salilab.org

You can reach the person managing the list at
        modpipe-users-owner@salilab.org

When replying, please edit your Subject line so it is more specific
than "Re: Contents of ModPipe-users digest..."


Today's Topics:

   1.  Modpipe problem (jb ZHOU)
   2. Re: Modpipe problem (Ben Webb)


----------------------------------------------------------------------

Message: 1
Date: Wed, 9 Mar 2016 09:42:10 +0800
From: jb ZHOU <zhoujb0920@gmail.com>
To: modpipe-users@salilab.org
Subject: [ModPipe-users]  Modpipe problem
Message-ID:
        <CACTggG+RgtqZPqb0-vvJLXxpDTw08AuGZYMzh0GB8CVVoes5qw@mail.gmail.com>
Content-Type: text/plain; charset="utf-8"

Dear ModPipe community:
I installed modpipe in our system,but when I run the example of modpipe,I
get the following error,I don't know how to deal with it:

$ ../main/ModPipe.pl --conf_file modpipe.conf --sequence_id
97e075794f588a59e8a0fb8a945814b1MLGIKIKP
MPLib::MPModules::GetProfile__E> Sequence file not found:
pwd/data/97e/97e075794f588a59e8a0fb8a945814b1MLGIKIKP/sequence/97e075794f588a59e8a0fb8a945814b1MLGIKIKP.fsa
ModPipe.pl__E> Failed to calculate BUILD_PROFILE profile
ModPipe.pl__E>    Sequence: 97e075794f588a59e8a0fb8a945814b1MLGIKIKP

Thanks for your help,
Zhoujb
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://salilab.org/archives/modpipe-users/attachments/20160309/009b5a92/attachment.html>

------------------------------

Message: 2
Date: Tue, 8 Mar 2016 22:09:57 -0800
From: Ben Webb <ben@salilab.org>
To: Help and discussion for users of ModPipe
        <modpipe-users@salilab.org>
Subject: Re: [ModPipe-users] Modpipe problem
Message-ID: <56DFBE35.2080600@salilab.org>
Content-Type: text/plain; charset=windows-1252; format=flowed

On 3/8/16 5:42 PM, jb ZHOU wrote:
> Dear ModPipe community:
> I installed modpipe in our system,but when I run the example of
> modpipe,I get the following error,I don't know how to deal with it:
>
> $ ../main/ModPipe.pl --conf_file modpipe.conf --sequence_id
> 97e075794f588a59e8a0fb8a945814b1MLGIKIKP
> MPLib::MPModules::GetProfile__E> Sequence file not found:
> pwd/data/97e/97e075794f588a59e8a0fb8a945814b1MLGIKIKP/sequence/97e075794f588a59e8a0fb8a945814b1MLGIKIKP.fsa

I'm pretty sure you shouldn't have a literal "pwd" here. Are you sure
you didn't mean `pwd` (with backticks)? That's what is suggested in the
documentation: http://salilab.org/modpipe/doc/running.html#examples

        Ben
--
ben@salilab.org                      https://salilab.org/~ben/
"It is a capital mistake to theorize before one has data."
        - Sir Arthur Conan Doyle


------------------------------

_______________________________________________
ModPipe-users mailing list
ModPipe-users@salilab.org
https://salilab.org/mailman/listinfo/modpipe-users

End of ModPipe-users Digest, Vol 8, Issue 1
*******************************************