Dear ModPipe community: I installed modpipe in our system,but when I run the example of modpipe,I get the following error,I don't know how to deal with it:
$ ../main/ModPipe.pl --conf_file modpipe.conf --sequence_id 97e075794f588a59e8a0fb8a945814b1MLGIKIKP MPLib::MPModules::GetProfile__E> Sequence file not found: pwd/data/97e/97e075794f588a59e8a0fb8a945814b1MLGIKIKP/sequence/97e075794f588a59e8a0fb8a945814b1MLGIKIKP.fsa ModPipe.pl__E> Failed to calculate BUILD_PROFILE profile ModPipe.pl__E> Sequence: 97e075794f588a59e8a0fb8a945814b1MLGIKIKP
Thanks for your help, Zhoujb
On 3/8/16 5:42 PM, jb ZHOU wrote: > Dear ModPipe community: > I installed modpipe in our system,but when I run the example of > modpipe,I get the following error,I don't know how to deal with it: > > $ ../main/ModPipe.pl --conf_file modpipe.conf --sequence_id > 97e075794f588a59e8a0fb8a945814b1MLGIKIKP > MPLib::MPModules::GetProfile__E> Sequence file not found: > pwd/data/97e/97e075794f588a59e8a0fb8a945814b1MLGIKIKP/sequence/97e075794f588a59e8a0fb8a945814b1MLGIKIKP.fsa
I'm pretty sure you shouldn't have a literal "pwd" here. Are you sure you didn't mean `pwd` (with backticks)? That's what is suggested in the documentation: http://salilab.org/modpipe/doc/running.html#examples
Ben
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jb ZHOU