These ModBase results files are only available to the academic community. If you belong to a commercial entity, or to an US national laboratory, you need to check whether you have a license for MODELLER (http://salilab.org/modeller and http://salilab.org/modeller/accelrys.html) with Accelrys. 

For details about the modeling pipeline and ModBase, please consult the ModBase home page, and the publication in the footer of the home page (http://salilab.org/modbase). 

The tar-files in this directory contain summary files, model files and alignment files for full genome calculations. 

Column names for the summary file: 
Run Name,Database ID,First Target Residue,Last Target Residue,Sequence identity,E-value,GA341,MPQS,z-dope,PDB code,PDB chain,First PDB residue,Last PDB residue ,hit history

Often, there are several models per sequence. For this reason, we appended a model number to the database id:

16129208.1
16129208.2 
or
TP_0002_1
TP_0002_2

This means that there are two models for the gi id 16129208, or two models for the database ID TP_0002. 
This convention is also used to name the model and alignment files.

The file all_attempted_sequences-genome_datasets.txt contains all database ids for full genome modeling calculations. 

The file genome_dataset.attempted_sequences.txt.gz contains only the entries with associated sequences in our sequences database table. Some genome dataset predate the automatic addition of the original sequences to our sequences table.