MODELLER 6v2 for MS Windows 

INSTALLATION.

1. Uncompress the mod6v2.zip package into your C: drive (all apropriate
   directories will be created under c:\mod6v2 directory). You may want to
   put the files into another directory and/or drive, in this case simply 
   uncompress then to other drive and/or move the main directory (mod6v2) 
   together with all subdirectories and files wherever you want.
2. There are two files with environmental variables for MODELLER: 
    c:\mod6v2\bin\mod.bat and c:\mod6v2\bin\modenv.bat .
   You need to edit these files and replace XXX in the line
    set KEY_MODELLER6v2=XXX
   with an appropriate MODELLER key (see MODELLER documentation for more
   details).
3. If you have placed your MODELLER in different drive and/or directory
   you need to replace c:\mod6v2 in the line
    set MODINSTALL6v2=c:\mod6v2
   with your drive and/or directory.
4. In order to run MODELLER from any script you need to add the following line
   in your script file before calling modeller:
    call c:\mod6v2\bin\modenv.bat
5. You may execute modeller in a windows command prompt by calling 
   c:\mod6v2\bin\mod.bat [arguments]
6. You may want to add the line
    call c:\mod6v2\bin\modenv.bat
   to your configuration script.
7. In order to use compressed PDB files from MODELLER a MS Windows version of
   GNU gzip (available on the Internet) has to be installed and placed in 
   the search path.    

The MODELLER was ported to MS Windows by the Computational Biology Service Unit
at Cornell Theory Center, Cornell University (cbsu@tc.cornell.edu).

    
