Sub-directories here contain various sample and test TOP files, some of
which are:

tutorial-model    ... sample modeling, given an alignment
align-model-steps ... sample alignment and modeling, given templates
all-steps         ... sample template searching, alignment, and modeling
loop              ... sample loop modeling, given a template
commands          ... sample .top files for each MODELLER command
debug-energy_INT  ... energy testing, internal development stuff
atom_files        ... atoms files for some TOP files
dev_INT           ... miscellaneous, internal development stuff

---

To execute all .top files                    :  run_tops1

To check all the resulting log files         :  Scan_all_err

To clean everything                          :  clean_tops1

Notes:

You need to have ASGL installed for all-steps/cluster.top not to fail
                     (FILE:  all-steps/alignment.seg.log message)
