CLEANFILES=*.log *.rsr segmatch.* *.ini* *.lib CHAINS*.bin *.mat *.sch *.ssm* \
           *.var toxin-* *.xref* *.clr *.fit* *.trc *.crd *_fit.pdb *.reg \
           *.iup *.fasta *.princ *.B *.ca *.noSS toxin.pap align2d.ali *.cif \
           align2d.pap 1fas-1.atm  color_aln_model.pap define_symmetry-* \
           2ctx.aln.pdb seqfilt.* pdb95.bin alntoprof.prf alntoprof.bin \
           readprofile.pir buildprofile.prf buildprofile.ali
DISTFILES=1aan.seg 1fas.atm 1fdx.swap.atm 1lzd.chn 1nbt.pdb 2abx.atm 2ctx.atm \
	  add_restraint.top align2d.top align3d.top align_consensus.top \
	  align.top all_hydrogen.top build_model.top build_profile.top \
	  color_aln_model.top compare_alignments.top debug_function.ali \
	  debug_function.sched debug_function.top define_symmetry.top \
	  describe.top edit_alignment.top ednf2.pap energy.top \
	  expand_alignment.top id_table.top iupac_model.top make_chains.top \
	  Makefile make_region.top make_restraints.top make_schedule.top \
	  make_topology_model.top malign3d.top malign.top mutate_model.top \
	  optimize.top orient_model.top patch_disulfides.top patch.top \
          pdb95.fsa \
	  pdb1fas.ent pdb2abx.ent pdb2ctx.ent pick_atoms.top \
	  pick_hot_atoms.top pick_restraints.top randomize_xyz.top \
	  read_alignment.top read_atom_classes.top read_model.top \
	  read_restyp_lib.top read_sequence_db.top reindex_restraints.top \
	  rename_segments.top reorder_atoms.top \
	  rotate_dihedrals.top rotate_model.top \
	  segment_matching.top sequence_search.top shuff_seqlib_500.bin \
	  seqfilter.top \
	  shuff_seqlib_500.fsa superpose.top swap_atoms_in_res.top t1.top \
	  toxin.ali transfer_res_numb.top transfer_xyz.top sequences.pir \
	  very-short-for-test.cod write_data.top write_pdb_xref.top \
          aln_to_prof.top toxin.prf read_profile.top
INSTDIR=$${MODINSTALL7v7}/examples/commands
TESTS="mod add_restraint.top; mod align2d.top; mod align3d.top; \
       mod align_consensus.top; mod align.top; mod all_hydrogen.top; \
       mod build_model.top; mod build_profile.top; mod color_aln_model.top; \
       mod compare_alignments.top; mod debug_function.top; \
       mod define_symmetry.top; mod describe.top; mod edit_alignment.top; \
       mod energy.top; mod expand_alignment.top; mod id_table.top; \
       mod iupac_model.top; mod make_chains.top; mod make_region.top; \
       mod make_restraints.top; mod make_schedule.top; \
       mod make_topology_model.top; mod malign3d.top; mod malign.top; \
       mod mutate_model.top; mod optimize.top; mod orient_model.top; \
       mod patch_disulfides.top; mod patch.top; mod pick_atoms.top; \
       mod pick_hot_atoms.top; mod pick_restraints.top; mod randomize_xyz.top; \
       mod read_alignment.top; mod read_atom_classes.top; mod read_model.top; \
       mod read_restyp_lib.top; mod read_sequence_db.top; \
       mod reindex_restraints.top; mod rename_segments.top; \
       mod reorder_atoms.top; mod rotate_dihedrals.top; mod rotate_model.top; \
       mod segment_matching.top; mod seqfilter.top; \
       mod sequence_search.top; mod superpose.top; mod swap_atoms_in_res.top; \
       mod t1.top; mod transfer_res_numb.top; mod transfer_xyz.top; \
       mod write_data.top; mod write_pdb_xref.top"
INCDIR=..

include ${INCDIR}/Makefile.include
