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energy_data.excl_local -- exclude certain local pairs of atoms

Description:
This specifies whether or not the atoms in a chemical bond, chemical angle, dihedral/improper angle, and in the excluded pairs list respectively are considered in the construction of the non-bonded atom pairs list. This is especially useful when simplified protein representations are used; e.g., when non-bonded restraints need to be used on ${C}_\alpha$${}_i$ - ${C}_\alpha$${}_{i+2}$ terms.



Ben Webb 2005-04-21