next up previous contents index
Next: Alignment file format Up: MODELLER command reference Previous: group_restraints.append() read   Contents   Index

The alignment class: comparison of sequences and structures

This section describes the format of the alignment file and commands for reading, writing, making, analyzing and using the alignments of sequences and structures (pairwise and multiple). For the underlying dynamic programming methods see Section 6.1.


Ben Webb 2006-02-28