next up previous contents index
Next: MODELLER command reference Up: loopmodel reference Previous: loopmodel.loop.outputs all   Contents   Index

loopmodel.select_loop_atoms() -- select region for loop optimization

Description:
By default, this selects all atoms near gaps in the alignment for loop optimization. You should redefine this routine if you do not have an alignment, or you wish to set a different region for loop optimization. See section 2.2.9 for an example.



Ben Webb 2006-02-28