next up previous contents index
Next: Obtaining and installing the Up: Introduction Previous: What is MODELLER?   Contents   Index


MODELLER bibliography

In your publications using MODELLER, please quote

A. Šali and T. L. Blundell. Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol. 234, 779-815, 1993.

More information about the methods implemented in MODELLER, their use, applications, and limitations can be found in the papers listed on our web site at http://salilab.org/publications/. Here is a subset of these publications:

  1. A. Šali and T. L. Blundell. Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol. 234, 779-815, 1993.

  2. A. Šali and J. P. Overington. Derivation of rules for comparative protein modeling from a database of protein structure alignments. Protein Science 3, 1582-1596, 1994.

  3. R. Sánchez and A. Šali. Comparative protein structure modeling: Introduction and practical examples with MODELLER. In Protein Structure Prediction: Methods and Protocols, D.M. Webster, editor, 97-129. Humana Press, 2000.

  4. M. A. Martí-Renom, A. Stuart, A. Fiser, R. Sánchez, F. Melo and A. Šali. Comparative protein structure modeling of genes and genomes. Ann. Rev. Biophys. Biomolec. Struct. 29, 291-325, 2000.

  5. A. Fiser, R. K. G. Do and A. Šali. Modeling of loops in protein structures. Protein Science 9, 1753-1773, 2000.

  6. F. Melo, R. Sánchez, A. Šali. Statistical potentials for fold assessment. Protein Science 11, 430-448, 2002.

  7. M. A. Martí-Renom, B. Yerkovich, and A. Šali. Comparative protein structure prediction. John Wiley & Sons, Inc. Current Protocols in Protein Science 1, 2.9.1 - 2.9.22, 2002.

  8. U. Pieper, N. Eswar, A. C. Stuart, V. A. Ilyin and A. Šali. MODBASE, a database of annotated comparative protein structure models. Nucleic Acids Research 30, 255-259, 2002.

  9. A. Fiser and A. Šali. MODELLER: generation and refinement of homology-based protein structure models. In Methods in Enzymology, C.W. Carter and R.M. Sweet, eds. Academic Press, San Diego, 374, 463-493, 2003.

  10. N. Eswar, B. John, N. Mirkovic, A. Fiser, V. A. Ilyin, U. Pieper, A. C. Stuart, M. A. Martí-Renom, M. S. Madhusudhan, B. Yerkovich and A. Šali. Tools for comparative protein structure modeling and analysis. Nucleic Acids Research 31, 3375-3380, 2003.


next up previous contents index
Next: Obtaining and installing the Up: Introduction Previous: What is MODELLER?   Contents   Index
Automatic builds 2014-02-11