edat = <energy_data> | objective function parameters | |
schedule_scale = <physical.values> | 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 | factors for physical restraint types in scaling the schedule |
residue_span_range = <int:2> | 0 99999 | range of residues spanning the allowed distances; for MAKE_RESTRAINTS, PICK_RESTRAINTS, non-bonded dynamic pairs |
max_iterations = <int:1> | 200 | maximal iterations in optimization |
output = <str:1> | 'LONG' | 'NO_REPORT' | 'REPORT' |
min_atom_shift = <float:1> | 0.010 | minimal atomic shift for the optimization convergence test |
actions = [] | list of periodic actions |
This functions in a very similar way to conjugate_gradients(), but uses a variable metric (quasi-Newton) method instead to find the minimum. The algorithm implemented in MODELLER is the BFGS or Broyden-Fletcher-Goldfarb-Shanno method [Press et al., 1992].