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The alnsequence class: a single sequence within an alignment

The alnsequence class contains a single sequence from an alignment. alnsequence objects can be accessed from an alignment object; see Section 6.14 for more details.

Example: examples/python/

# Example for alnsequence objects

from modeller import *

env = environ()

aln = alignment(env, file='../commands/toxin.ali')
print "Alignment contains %d sequences:" % len(aln)
for seq in aln:
    print "   Sequence %s from %s contains %d residues" \
          % (seq.code, seq.source, len(seq))


Ben Webb 2007-01-19