next up previous contents index
Next: Automatic loop refinement after Up: Automated comparative modeling with Previous: Fully automated alignment and   Contents   Index


Loop optimization

MODELLER has several loop optimization methods, which all rely on scoring functions and optimization protocols adapted for loop modeling [Fiser et al., 2000]. They are used to refine loop regions, either automatically after standard model building, or manually on an existing PDB file.



Subsections

Ben Webb 2008-02-01