- ... alignment.2.1
- If the residue type is defined in
'modlib/restyp.lib' you can use the 1-letter code that is specified there,
but if in doubt use '.', since that matches everything.
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- ... restraints2.2
- The
restraints include bond, angle and dihedral angle restraints.
The SG -- SG atom pair also becomes an excluded atom pair that is not checked
for an atom-atom overlap. The
dihedral angle restraints will depend
on the conformation of the equivalent disulfides in the template structure,
as described in [Š
ali & Overington, 1994].
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- ...
exception5.1
- MODELLER can raise the following Python exceptions:
ZeroDivisionError, IOError, MemoryError, EOFError,
TypeError, NotImplementedError, IndexError, and ValueError.
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- ...
6.1
- The target distances were all obtained from a regular
-helix in
one of the high-resolution myoglobin structures.
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- ...http://www.ks.uiuc.edu/Research/vmd/.
6.2
- Note that binary trajectory files are machine dependent; it is up
to the visualization software to do any necessary byte-swapping.
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