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Next: profile.write() write Up: The profile class: using Previous: profile() create   Contents   Index -- read a profile of a sequence

read(file, profile_format)
This command will read a profile from a specified file. Two formats are supported: TEXT and BINARY.

For the format of text files, see Section B.3. Binary format files are standard HDF5 files (see Section B.4).

Example: examples/commands/

# Example file for:, profile.to_alignment()

from modeller import *

env = environ()

# Create a new, blank, profile
prf = profile(env)

# Read in the profile file'toxin.prf', profile_format='TEXT')

# Convert the profile to alignment
aln = prf.to_alignment()

# Write out the alignment
aln.write(file='readprofile.pir', alignment_format='PIR')

Ben Webb 2008-05-05