next up previous contents index
Next: automodel.special_patches() add Up: automodel reference Previous: automodel.special_restraints() add   Contents   Index

automodel.nonstd_restraints() -- add restraints on ligands

nonstd_restraints(aln)
This routine adds restraints to keep residues that have no defined topology (generally BLK residues, used to transfer ligands directly from templates, as described in Section 2.2.1) in a reasonable conformation. You can override this method if you need to change these restraints.

By default, three sets of restraints are built:



Ben Webb 2008-05-05