# Example for: topology.make(), topology.write()

# This creates a topology library for heavy atoms from the
# CHARMM all-atom topology library:

from modeller import *

env = Environ()

tpl = env.libs.topology
# Read CHARMM all-atom topology library:
tpl.read(file='${LIB}/top.lib')

# Keep only heavy atoms (TOPOLOGY_MODEL = 3)
tpl.make(submodel=3)

# Write the resulting topology library to a new file:
tpl.write(file='top_heav.lib')