This command will read a profile from a specified file. Two formats are supported: TEXT and BINARY.
For the format of text files, see Section B.3. Binary format files are standard HDF5 files (see Section B.4).
For TEXT files, file can be either a file name or a readable file handle (see modfile.File()). For BINARY files, it must be a file name.
# Example file for: Profile.read(), Profile.to_alignment() from modeller import * env = Environ() # Create a new, blank, profile prf = Profile(env) # Read in the profile file prf.read(file='toxin.prf', profile_format='TEXT') # Convert the profile to alignment aln = prf.to_alignment() # Write out the alignment aln.write(file='readprofile.pir', alignment_format='PIR')