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== Examples ==
== Examples ==
* ["Restraints on pseudo atoms"]: demonstrates the use of restraints between real and pseudo atoms.
* [[Restraints_on_pseudo_atoms]]: demonstrates the use of restraints between real and pseudo atoms.
* ["Mutate model"]: demonstrates the mutation and optimization of a single residue (SNP).
* [[Mutate_model]]: demonstrates the mutation and optimization of a single residue (SNP).
* ["Missing residues"]: demonstrates using Modeller to fill in missing residues.
* [[Missing_residues]]: demonstrates using Modeller to fill in missing residues.
* ["Rebuilding sequence databases"]: scripts to rebuild sequence databases from PDB.
* [[Rebuilding_sequence_databases]]: scripts to rebuild sequence databases from PDB.
* ["Cyclic protein"]: demonstrates how to build a model of a cyclic protein.
* [[Cyclic_protein]]: demonstrates how to build a model of a cyclic protein.
* ["Cluster PDBs"]: make a clustered representative from a set of PDBs of the same sequence.
* [[Cluster_PDBs]]: make a clustered representative from a set of PDBs of the same sequence.
* ["Using non-standard parameter files"]: using customized restyp.lib, par.lib and top.lib files with automodel.
* [[Using_non-standard_parameter_files]]: using customized restyp.lib, par.lib and top.lib files with automodel.
* ["Make alpha helix"]: make an alpha-helical model from primary sequence alone.
* [[Make_alpha_helix]]: make an alpha-helical model from primary sequence alone.



Revision as of 00:00, 1 January 1970

This page contains example Python scripts for MODELLER. To submit your own examples, simply edit this page to add them.

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Examples