Wrappers for external binaries
******************************

These modules provide convenience classes for calling various external binaries.

:mod:`modpipe.cdhit` -- Wrapper for CD-HIT
==========================================

.. module:: modpipe.cdhit
   :synopsis: Wrapper for CD-HIT

.. autoclass:: CDHit
   :members:


:mod:`modpipe.ce` -- Wrapper for CE
===================================

.. module:: modpipe.ce
   :synopsis: Wrapper for CE

.. autoclass:: CE
   :members:

.. autoexception:: Error


:mod:`modpipe.tmalign` -- Wrapper for TMAlign
=============================================

.. module:: modpipe.tmalign
   :synopsis: Wrapper for TMAlign

.. autoclass:: TMAlign
   :members: