Fold assignment methods

modpipe.fold_assignment – Fold assignment methods

Various methods for fold assignment

class modpipe.fold_assignment.Hit

A single target-template hit detected by a fold assignment method.

get_modeling_alignment()

Return a Modeller alignment object suitable for modeling.

class modpipe.fold_assignment.ProfileSequence(env, database, opts)

Profile-sequence search for templates against the given database.

search(target_code, prffile)

Search the profile of the sequence target_code (stored in prffile) against the database. Return a list of all hits.

class modpipe.fold_assignment.SequenceSequence(env, database, opts)

Sequence-sequence search for templates against the given database.

search(target_code, sequence)

Search for the single sequence target_code from the alignment file sequence in the database. Return a list of all hits.