Various methods for fold assignment
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class modpipe.fold_assignment.Hit
A single target-template hit detected by a fold assignment method.
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get_modeling_alignment()
Return a Modeller alignment object suitable for modeling.
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class modpipe.fold_assignment.ProfileSequence(env, database, opts)
Profile-sequence search for templates against the given database.
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search(target_code, prffile)
Search the profile of the sequence target_code (stored in
prffile) against the database. Return a list of all hits.
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class modpipe.fold_assignment.SequenceSequence(env, database, opts)
Sequence-sequence search for templates against the given database.
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search(target_code, sequence)
Search for the single sequence target_code from the alignment file
sequence in the database. Return a list of all hits.