Re: [ModPipe-users] External dependencies

[Marco Galardini <>]

Many thanks Ben,

I should have read the online docs more carefully :)

Marco

On 19/05/14 17:46, Ben Webb wrote:
> On 5/19/14, 9:42 AM, Marco Galardini wrote:
> > I'm interested in running a local instance of modpipe, but some of the
> > external dependencies are a bit tricky to be found; in particular:
> >
> > - JESS
> > - CE (maybe available here? 
> > http://cl.sdsc.edu/jfatcatserver/download.jsp)
> > - SEG
>
> From the online docs:
> "Other packages are only rarely used by ModPipe, so it is probably not 
> necessary to install them."
>
> We use CE internally in a utility script or two, but I don't think we 
> use JESS or SEG any more. Either way, none of them are used by the 
> main ModPipe pipeline.
>
>     Ben

--
Marco Galardini
Postdoctoral Fellow
EMBL-EBI - European Bioinformatics Institute
Wellcome Trust Genome Campus
Hinxton, Cambridge CB10 1SD, UK
Phone: +44 (0)1223 49 2547