Re: [ModPipe-users] MODELLER bug report

[Marco Galardini <>]

Hi Ben,

sorry to bother you, have you had any time to look into our case? The 
pssm profiles seem ok to me, any other thing we should look at? Should 
the pdb directory contain uncompressed structures?

Kind regards,
Marco

On 05/06/14 19:55, Ben Webb wrote:
> On 6/5/14, 6:03 AM, Marco Galardini wrote:
> > *alloc_p_215E> Dynamic memory allocation failed.**
> > **              Routine, variable, status:  ipssm         3**
>
> This happens if you give Modeller an empty PSSM database (it tries to 
> allocate 0 bytes of memory to store it). It's already "fixed" in the 
> upcoming 9.14 release, in that it'll give you a more intelligible 
> error message, but the underlying cause is that something is wrong 
> with your PSSM file.
>
>     Ben

--
Marco Galardini
Postdoctoral Fellow
EMBL-EBI - European Bioinformatics Institute
Wellcome Trust Genome Campus
Hinxton, Cambridge CB10 1SD, UK
Phone: +44 (0)1223 49 2547