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U
A
analyze_enrichment() (benchmark.dsscorestats method)
analyze_score() (benchmark.dsscorestats method)
assess() (scorer.scorer method)
B
benchmark
module
build() (decoys.Decoys4Single method)
(decoys.DecoySet method)
(decoys.DecoySets method)
build_dockingdecoys_withtransformation() (decoys.Decoys4Single method)
C
calc_rmsd() (decoys.Decoys4Single method)
calc_score() (rankScores.spdsscore method)
calc_score_fromlist() (rankScores.spdsscore method)
calc_sp_all() (statsTable.rawsp method)
cat_files() (in module decoys)
checkRMSD (class in loop)
crossValidate
module
D
decode_genmethod() (in module utility)
decoys
module
Decoys4Single (class in decoys)
DecoySet (class in decoys)
DecoySets (class in decoys)
dsscore (class in rankScores)
dsscorestats (class in benchmark)
E
envConfig
module
F
feature
module
feature (class in feature)
G
generate_job_submit_script() (in module jobSchedule)
get_loop_actions() (loop.MyLoop method)
(loop.ORLoop method)
get_sf() (recoveryFunction.sf method)
I
initialize_topmodels() (benchmark.dsscorestats method)
J
jobSchedule
module
K
k2cv (class in crossValidate)
k2cvcluster (class in crossValidate)
k2cvlocal (class in crossValidate)
L
load_scorer() (in module utility)
localtask (class in jobSchedule)
loop
module
loop_model_analysis() (loop.MyLoop method)
(loop.ORLoop method)
M
MemoryMonitor (class in utility)
modelSelection
module
module
benchmark
crossValidate
decoys
envConfig
feature
jobSchedule
loop
modelSelection
rankScores
recoveryFunction
refineScores
sampling
scorer
sequences
statsTable
utility
monitor() (jobSchedule.localtask method)
(jobSchedule.task method)
(jobSchedule.taskchain method)
(jobSchedule.tasklist method)
monitor2end() (jobSchedule.tasklist method)
multiple_loop_models() (loop.MyLoop method)
MyLoop (class in loop)
Mymodel (class in utility)
mypickle (class in utility)
O
optimize() (sampling.optimizer method)
optimizer (class in sampling)
ORLoop (class in loop)
P
parlist (class in modelSelection)
pir (class in sequences)
R
rankScores
module
rawsp (class in statsTable)
recoveryFunction
module
refineScores
module
report_job_runstatus() (in module jobSchedule)
S
sampling
module
scaledsp (class in statsTable)
scorer
module
scorer (class in scorer)
sequences
module
sf (class in recoveryFunction)
sfdsscore (class in rankScores)
sgmd() (in module loop)
single_loop_model() (loop.MyLoop method)
(loop.ORLoop method)
spdsscore (class in rankScores)
sprefine (class in loop)
sprefinescore (class in refineScores)
sps (class in modelSelection)
spss (class in modelSelection)
statsTable
module
T
task (class in jobSchedule)
taskchain (class in jobSchedule)
tasklist (class in jobSchedule)
U
usage() (utility.MemoryMonitor method)
utility
module
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