Collection of sequences for known structures or decoys¶
A module for processing protein sequences in PIR format.
- class sequences.pir(path='')[source]¶
Process PIR files for use by MDT.
MDT calculates statistics from structures by looping through a PIR file containing all sequences for the structures.
The last two fields in the PIR header (X-ray resolution and the r factor) can be repurposed to define the error bar parameters associated with each structure, used by MDT to calculate the error bar on the position of each atom.
- Parameters:
path: path to the PIR file.