Re: [ModPipe-users] Is it possible to calculate MPQS (ModPipe Quality Score) of models generated using MODELLER using MODpipe

[Ben Webb <>]

On 8/13/15 3:53 AM, Su Datt Lam wrote:
> However, recently, I found out about MPQS and find it very interesting.
> Is it possible for me to assess the models that I have created using
> ModPipe without rebuilding the models again?

You can see the code itself that calculates the quality score in the 
GetModelRating function in lib/perl/MPLib/MPModules.pm. That code 
assumes it is reading in a YAML ModPipe models file:
http://salilab.org/modpipe/doc/file-formats.html

However, since MPQS is just a linear combination of other assessment 
scores, if you have calculated those scores already it wouldn't be too 
hard to recalculate MPQS yourself in the same way. (The only one you are 
probably missing is the alignment KS score, which is output by 
profile.build() when you search for templates.)

	Ben
--
                      http://salilab.org/~ben/
"It is a capital mistake to theorize before one has data."
	- Sir Arthur Conan Doyle