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26S-PIPs complex

Modeling the structures of complexes between the 26S proteasome and proteasome interacting proteins PubMed logo

tickVerified to work with the latest stable IMP release (2.9.0). The files are also available at GitHub.
Additional software needed to use these files: IMP numpy install instructions

Anaconda logo To install the software needed to reproduce this system with the Anaconda Python command line tool (conda), run the following commands:

conda config --add channels salilab
conda install imp numpy

UCSF logo To set up the environment on the UCSF QB3 cluster to run this system, run:

module load imp python/numpy
Tags chemical crosslinks PMI

DOI

26S-PIPs

The modeling.py script demonstrates the use of IMP and PMI in the modeling of the 26S proteasome - UBLCP1 complex, using chemical crosslinking and comparative modeling.

The modeling protocol will work with a default build of IMP.

List of files and directories:

Running the IMP/PMI scripts for the 26S-UBLCP1 complex:

Information

Author(s): Peter Cimermancic, Charles Greenberg

Date: May 17th, 2016

License: CC-BY-SA-4.0. This work is freely available under the terms of the Creative Commons Attribution-ShareAlike 4.0 International License.

Last known good IMP version: build info build info

Publications: