This benchmark tests the AllosMod method, as implemented in the AllosMod library and AllosMod web service.
3UWPA: basic test of the method
input_glyc: test of the support for glycosylation
To run the benchmark, first install AllosMod and its dependencies.
Then, in each directory, run
allosmod setup to check the input files; this
will generate a file
qsub.sh. Run this script to set up the system. In the
3UWPA case, this is in turn will generate input files for
MODELLER which should be run with that program.
Author(s): Patrick Weinkam, Ben Webb
License: LGPL. This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.