Re: [IHM-repval] Linking integrative models out to experimental data

[Aleksandras Gutmanas <>]

Hi Ben and Kumaran,

Thanks for starting the thread. There is also a nice example of NMR, 
SAXS, SANS and even EM used in generating a protein/RNA complex: PDB 
entry 4by9, BMRB entry 19400: 
http://europepmc.org/abstract/MED/24121435, pdbe.org/4by9

Best,
Aleks

On 13/03/2017 15:21, Kumaran Baskaran wrote:
> Thanks Ben. I am aware of at least one used case in RNA structural
> analysis using NRM-SAXS/WAXS.
>
> https://www.ncbi.nlm.nih.gov/pubmed/26655855
>
> I hope there may be many .
>
> -Kumaran
>
>
> On 03/06/2017 07:36 PM, Ben Webb wrote:
> > On 2/28/17 9:30 AM, Kumaran Baskaran wrote:
> > > I've noticed that you haven’t included NMR data in to your
> > > integrative or hybrid modeling system.  BMRB maintains the archive of
> > > all kind of NMR experimental data. It is available in  NMR-STAR
> > > format.  We have different kind of distance restraints extracted from
> > > different NMR experiments, which could be effectively used for IHM.
> >
> > Thanks for the info! The only reason why we didn't list NMR in the
> > wiki is that we don't currently have any use cases where people have
> > generated integrative models including NMR data. Are you aware of any?
> >
> >     Ben
>
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