[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

MODELLER for phylogenetics



Hi All,

I am here with some problems which are not directly related to modelling. I want
to use the MODELLER to draw Phylogenetic trees of some proteins from their struc
tural comparisons. These proteins supposedly belong to a superfamily having less
than 10% sequence identity. My problems are following:

1)Is there any ready script to achieve the above?

2)As an input to Phylip I need an alignment file after structural comparison
where no target consensus sequence is needed. How to get that?

3)The structural comparison suggested here-is it a multifeatured one? If so,
is there any literature reference containing a list of comparison parameters?

Please help.
Debashis.
------------------------------------------------------------------------------
  ("`-''-/").___..--''"`-._			
   `6_ 6  )   `-.  (     ).`-.__.`)	     Debashis Mukhopadhyay
   (_Y_.)'  ._   )  `._ `. ``-..-'	     Research Fellow,C&MB Div.,
 _..`--'_..-_/  /--'_.' ,'                   Saha Institute Of Nuclear Physics,
(il).-''  (li).'  ((!.-'                     1/AF, Bidhannagar,Calcutta-700 064.
                                             India.
                                             
------------------------------------------------------------------------------