Hi All,
I am here with some problems which are not directly related to modelling. I want
to use the MODELLER to draw Phylogenetic trees of some proteins from their struc
tural comparisons. These proteins supposedly belong to a superfamily having less
than 10% sequence identity. My problems are following:
1)Is there any ready script to achieve the above?
2)As an input to Phylip I need an alignment file after structural comparison
where no target consensus sequence is needed. How to get that?
3)The structural comparison suggested here-is it a multifeatured one? If so,
is there any literature reference containing a list of comparison parameters?
Please help.
Debashis.
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("`-''-/").___..--''"`-._
`6_ 6 ) `-. ( ).`-.__.`) Debashis Mukhopadhyay
(_Y_.)' ._ ) `._ `. ``-..-' Research Fellow,C&MB Div.,
_..`--'_..-_/ /--'_.' ,' Saha Institute Of Nuclear Physics,
(il).-'' (li).' ((!.-' 1/AF, Bidhannagar,Calcutta-700 064.
India.
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