Hi All,
I am presently trying to run MALIGN for 15 sequences, taking them from their
respective PDB co-ordinates. With upto 5 sequences (taken at random)the multiple
alignment is working all right, but it is failing for 6 or more inputs.
Here is the .log file
"...................
openf5___> file does not exist: /disk2/pdb/pdb.ent/List.ent
(do not worry about this one)
rdpir___E> increase MAXSEQ
openf5__E> error openning file
rdpir___E> alignment sequence not found in PDB file: 1
./
............................"
I've tried several Gap Penalty combinations.
Please help me as I'm not sure where the mistake is.
Debashis.
------------------------------------------------------------------------------
("`-''-/").___..--''"`-._
`6_ 6 ) `-. ( ).`-.__.`) Debashis Mukhopadhyay
(_Y_.)' ._ ) `._ `. ``-..-' Research Fellow,C&MB Div.,
_..`--'_..-_/ /--'_.' ,' Saha Institute Of Nuclear Physics,
(il).-'' (li).' ((!.-' 1/AF, Bidhannagar,Calcutta-700 064.
India.
------------------------------------------------------------------------------