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Problem with MALIGN



Hi All,

I am presently trying to run MALIGN for 15 sequences, taking them from their
respective PDB co-ordinates. With upto 5 sequences (taken at random)the multiple
alignment is working all right, but it is failing for 6 or more inputs.
Here is the .log file
"...................
openf5___> file does not exist: /disk2/pdb/pdb.ent/List.ent
           (do not worry about this one)
rdpir___E> increase MAXSEQ
openf5__E> error openning file
rdpir___E> alignment sequence not found in PDB file:   1
            ./
............................"

I've tried several Gap Penalty combinations.  
Please help me as I'm not sure where the mistake is.

Debashis.
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  ("`-''-/").___..--''"`-._			
   `6_ 6  )   `-.  (     ).`-.__.`)	     Debashis Mukhopadhyay
   (_Y_.)'  ._   )  `._ `. ``-..-'	     Research Fellow,C&MB Div.,
 _..`--'_..-_/  /--'_.' ,'                   Saha Institute Of Nuclear Physics,
(il).-''  (li).'  ((!.-'                     1/AF, Bidhannagar,Calcutta-700 064.
                                             India.
                                             
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